What is 2Danalysis?

2Danalysis is a toolbox for the analysis of simulation trajectories of biomolecules projected onto 2D planar interfaces of interest. MembProp and BioPolymer2D are the two hubs to analyze interactions of lipid membrane molecules and biopolymers (nucleic acids, proteins, glycans), respectively. This project is maintained continuously by the Monje Group from the University at Buffalo (USA) and Guzman Research from the Universidad Autonoma de Madrid (Spain).

The toolbox is built on MDAnalysis and compatible with output files from any molecular dynamcis engine. Our core runs by default using the atom nomenclature of the charmm36 force field, but the user can define names for other forcefields with some changes in the code. In the future, we plan to add automated support to more simulation force fields.

2Danalysis is a an open-source library with detailed documentation and comprehensive tutorials (https://github.com/pyF4all/2DanalysisTutorials). Users may cite and use the code acording to their research needs

and customize anlysis pipelines. You may direct questions or suggestions via email to vmonje@buffalo.edu & hguzman@icmab.es